diff --git a/horizon.dhall b/horizon.dhall
index 1887f0af8749209d9f81bd0d085d8a28d15b7c07..919ed1ad3564f7d4a7d34ba5bd0ff9e354042a20 100644
--- a/horizon.dhall
+++ b/horizon.dhall
@@ -2,13 +2,9 @@ let H =
https://gitlab.horizon-haskell.net/dhall/horizon-spec/-/raw/0.10.0/horizon-spec/package.dhall
let packages =
- { BiobaseENA = H.callHackage "BiobaseENA" "0.0.0.2"
- , BiobaseTypes = H.callHackage "BiobaseTypes" "0.2.1.0"
- , DPutils = H.callHackage "DPutils" "0.1.1.0"
+ { DPutils = H.callHackage "DPutils" "0.1.1.0"
, ForestStructures = H.callHackage "ForestStructures" "0.0.1.0"
, Octree = H.callHackage "Octree" "0.6.0.1"
- , OrderedBits = H.callHackage "OrderedBits" "0.0.2.0"
- , PrimitiveArray = H.callHackage "PrimitiveArray" "0.9.0.0"
, SciBaseTypes = H.callHackage "SciBaseTypes" "0.1.1.0"
, bimaps = H.callHackage "bimaps" "0.1.0.2"
, biocore = H.callHackage "biocore" "0.3.1"
diff --git a/horizon.lock b/horizon.lock
index 3e84946a74c38d3cc130c388d48b1d95626c8b9e..7d535ba0f4fd58553107c0cec69d918a83af23a8 100644
--- a/horizon.lock
+++ b/horizon.lock
@@ -1,12 +1,4 @@
-[ { mapKey = "BiobaseENA"
- , mapValue =
- "65c47bd828830627f3db2ce31e27ee724eec8b39a5ea3358f5ef454ee08a229a"
- }
-, { mapKey = "BiobaseTypes"
- , mapValue =
- "216930f2c0b7c207553cac00d936a1bb329553ebeed240c1fa2f3225d84c295f"
- }
-, { mapKey = "DPutils"
+[ { mapKey = "DPutils"
, mapValue =
"183cfe93d04c6f18ac5bfcd81b16af4767eea035f47c9b01b77122d34817be80"
}
@@ -18,14 +10,6 @@
, mapValue =
"0697a223d72245a0f0f0e7787c180ca81e01393fc8f621555a72036b98615c1e"
}
-, { mapKey = "OrderedBits"
- , mapValue =
- "78671553d8b003ae520d1a748f829a076209fc4a4bfde0ad971017e3db58cc51"
- }
-, { mapKey = "PrimitiveArray"
- , mapValue =
- "717b452b22d348308e44d5afc09bbe167d57da852e9da532e78d30f4886c45f5"
- }
, { mapKey = "SciBaseTypes"
, mapValue =
"1129c041a58ccca667314afc78db149fdb282cacf658512d015761b45b68f036"
diff --git a/overlay.nix b/overlay.nix
index 8de33d58afafda6663c3b417fad0337b12ed101c..7f25e6b048da017a7c224ba0dfcb8dbd7cb63fcd 100644
--- a/overlay.nix
+++ b/overlay.nix
@@ -2,20 +2,12 @@
{ pkgs, f ? (final: prev: n: v: v), ... }:
final: prev: with pkgs.haskell.lib; {
- BiobaseENA = f final prev "BiobaseENA" (final.callPackage (./pkgs/BiobaseENA.nix) { });
-
- BiobaseTypes = f final prev "BiobaseTypes" (final.callPackage (./pkgs/BiobaseTypes.nix) { });
-
DPutils = f final prev "DPutils" (final.callPackage (./pkgs/DPutils.nix) { });
ForestStructures = f final prev "ForestStructures" (final.callPackage (./pkgs/ForestStructures.nix) { });
Octree = f final prev "Octree" (final.callPackage (./pkgs/Octree.nix) { });
- OrderedBits = f final prev "OrderedBits" (final.callPackage (./pkgs/OrderedBits.nix) { });
-
- PrimitiveArray = f final prev "PrimitiveArray" (final.callPackage (./pkgs/PrimitiveArray.nix) { });
-
SciBaseTypes = f final prev "SciBaseTypes" (final.callPackage (./pkgs/SciBaseTypes.nix) { });
bimaps = f final prev "bimaps" (final.callPackage (./pkgs/bimaps.nix) { });
diff --git a/pkgs/BiobaseENA.nix b/pkgs/BiobaseENA.nix
deleted file mode 100644
index 74dad57a2c466163f00f9de3ddb724062d19644c..0000000000000000000000000000000000000000
--- a/pkgs/BiobaseENA.nix
+++ /dev/null
@@ -1,32 +0,0 @@
-{ mkDerivation, BiobaseTypes, QuickCheck, base, bytestring
-, containers, directory, file-embed, lens, lib, megaparsec, mtl
-, tasty, tasty-quickcheck, tasty-th, text, vector, vector-th-unbox
-}:
-mkDerivation {
- pname = "BiobaseENA";
- version = "0.0.0.2";
- sha256 = "cd1eee4d2ef03a89610a85a4dadf3deedf00b1b5e03fddf39a95c835744e296d";
- isLibrary = true;
- isExecutable = false;
- enableSeparateDataOutput = false;
- libraryHaskellDepends = [
- base BiobaseTypes bytestring containers directory file-embed lens
- megaparsec mtl text vector vector-th-unbox
- ];
- testHaskellDepends = [
- base BiobaseTypes bytestring containers directory file-embed lens
- megaparsec mtl QuickCheck tasty tasty-quickcheck tasty-th text
- vector vector-th-unbox
- ];
- enableLibraryProfiling = true;
- enableExecutableProfiling = true;
- doHaddock = true;
- jailbreak = true;
- doCheck = false;
- doBenchmark = false;
- hyperlinkSource = false;
- homepage = "https://github.com/choener/BiobaseENA";
- description = "European Nucleotide Archive data";
- license = lib.licenses.bsd3;
- broken = false;
-}
\ No newline at end of file
diff --git a/pkgs/BiobaseTypes.nix b/pkgs/BiobaseTypes.nix
deleted file mode 100644
index eaf77af41a8809310676dd6257ff0e2db3b41c78..0000000000000000000000000000000000000000
--- a/pkgs/BiobaseTypes.nix
+++ /dev/null
@@ -1,43 +0,0 @@
-{ mkDerivation, DPutils, ForestStructures, PrimitiveArray
-, QuickCheck, SciBaseTypes, aeson, attoparsec, base, bimaps, binary
-, bytestring, cereal, cereal-text, cereal-vector, containers
-, data-default, deepseq, hashable, intern, lens, lib, mtl
-, primitive, streaming, string-conversions, tasty, tasty-hunit
-, tasty-quickcheck, tasty-th, text, text-binary, utf8-string
-, vector, vector-binary-instances, vector-th-unbox
-}:
-mkDerivation {
- pname = "BiobaseTypes";
- version = "0.2.1.0";
- sha256 = "6af9224ffdd514314b5f7748460d4b1c85f0a9a8701b3448309caf8e20b5a53e";
- isLibrary = true;
- isExecutable = false;
- enableSeparateDataOutput = false;
- libraryHaskellDepends = [
- aeson attoparsec base bimaps binary bytestring cereal cereal-text
- cereal-vector containers data-default deepseq DPutils
- ForestStructures hashable intern lens mtl primitive PrimitiveArray
- QuickCheck SciBaseTypes streaming string-conversions text
- text-binary utf8-string vector vector-binary-instances
- vector-th-unbox
- ];
- testHaskellDepends = [
- aeson attoparsec base bimaps binary bytestring cereal cereal-text
- cereal-vector containers data-default deepseq DPutils
- ForestStructures hashable intern lens mtl primitive PrimitiveArray
- QuickCheck SciBaseTypes streaming string-conversions tasty
- tasty-hunit tasty-quickcheck tasty-th text text-binary utf8-string
- vector vector-binary-instances vector-th-unbox
- ];
- enableLibraryProfiling = true;
- enableExecutableProfiling = true;
- doHaddock = true;
- jailbreak = true;
- doCheck = false;
- doBenchmark = false;
- hyperlinkSource = false;
- homepage = "https://github.com/choener/BiobaseTypes";
- description = "Collection of types for bioinformatics";
- license = lib.licenses.bsd3;
- broken = false;
-}
\ No newline at end of file
diff --git a/pkgs/OrderedBits.nix b/pkgs/OrderedBits.nix
deleted file mode 100644
index 9f40796ff60cd6f94097797b8e98abfea052ddef..0000000000000000000000000000000000000000
--- a/pkgs/OrderedBits.nix
+++ /dev/null
@@ -1,29 +0,0 @@
-{ mkDerivation, QuickCheck, base, bits, criterion, lib, primitive
-, tasty, tasty-quickcheck, tasty-th, vector, vector-algorithms
-}:
-mkDerivation {
- pname = "OrderedBits";
- version = "0.0.2.0";
- sha256 = "0530dc8bb05ebdfdb179e3de5260d96393587c2632de89a40af6fdd5cb3fcbcd";
- isLibrary = true;
- isExecutable = false;
- enableSeparateDataOutput = false;
- libraryHaskellDepends = [
- base bits primitive vector vector-algorithms
- ];
- testHaskellDepends = [
- base QuickCheck tasty tasty-quickcheck tasty-th vector
- ];
- benchmarkHaskellDepends = [ base criterion ];
- enableLibraryProfiling = true;
- enableExecutableProfiling = true;
- doHaddock = true;
- jailbreak = true;
- doCheck = false;
- doBenchmark = false;
- hyperlinkSource = false;
- homepage = "https://github.com/choener/OrderedBits";
- description = "Efficient ordered (by popcount) enumeration of bits";
- license = lib.licenses.bsd3;
- broken = false;
-}
\ No newline at end of file
diff --git a/pkgs/PrimitiveArray.nix b/pkgs/PrimitiveArray.nix
deleted file mode 100644
index d74468557473a025b5d97ec7739243789021fced..0000000000000000000000000000000000000000
--- a/pkgs/PrimitiveArray.nix
+++ /dev/null
@@ -1,34 +0,0 @@
-{ mkDerivation, DPutils, OrderedBits, QuickCheck, aeson, base
-, binary, bits, cereal, cereal-vector, containers, deepseq
-, hashable, lens, lib, log-domain, mtl, primitive, smallcheck
-, tasty, tasty-quickcheck, tasty-smallcheck, tasty-th, text, vector
-, vector-binary-instances, vector-th-unbox
-}:
-mkDerivation {
- pname = "PrimitiveArray";
- version = "0.9.0.0";
- sha256 = "7117ed12d35ca80d2cfc444ac2c5094d8dfed6523e48637089f4de26d9091b7e";
- isLibrary = true;
- isExecutable = false;
- enableSeparateDataOutput = false;
- libraryHaskellDepends = [
- aeson base binary bits cereal cereal-vector deepseq DPutils
- hashable lens log-domain mtl OrderedBits primitive QuickCheck
- smallcheck text vector vector-binary-instances vector-th-unbox
- ];
- testHaskellDepends = [
- base containers QuickCheck smallcheck tasty tasty-quickcheck
- tasty-smallcheck tasty-th
- ];
- enableLibraryProfiling = true;
- enableExecutableProfiling = true;
- doHaddock = true;
- jailbreak = true;
- doCheck = false;
- doBenchmark = false;
- hyperlinkSource = false;
- homepage = "https://github.com/choener/PrimitiveArray";
- description = "Efficient multidimensional arrays";
- license = lib.licenses.bsd3;
- broken = false;
-}
\ No newline at end of file