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Release 0.3.1: excludeAutoImport option for mkFlake

Smartypants requested to merge release-0.3.1 into master

Add excludeAutoImport option to mkFlake for meta-projects that wrap sub-input modules.

Fixes duplicate option declaration errors in projects like horizon-flake-parts that define wrapper modules around their sub-inputs.

Backwards-compatible: second arg accepts either a path or { dir = ./nix; excludeAutoImport = [...]; }.

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